Topology
========

Topology definition
-------------------

.. currentmodule:: mstk.topology

.. autosummary::
    :toctree: _generated/

    Topology
    Atom
    Molecule
    Residue
    UnitCell

Connectivity
~~~~~~~~~~~~

.. currentmodule:: mstk.topology

.. autosummary::
    :toctree: _generated/

    Bond
    Angle
    Dihedral
    Improper

Virtual site
------------

.. currentmodule:: mstk.topology

.. autosummary::
    :toctree: _generated/

    VirtualSite
    TIP4PSite

Topology parser
---------------

.. currentmodule:: mstk.topology

.. autosummary::
    :toctree: _generated/

    Psf
    LammpsData
    Pdb
    Zmat
    Smi
    GroTopology
    XyzTopology