.. mstk documentation master file, created by
   sphinx-quickstart on Mon Jun 29 12:36:37 2020.
   You can adapt this file completely to your liking, but it should at least
   contain the root `toctree` directive.

mstk
=======

`mstk` is a toolkit for preparing, running and analyzing molecular simulations.
It simplifies the workflow of setting up a simulation by
manageable atom type and force field assignment, topology manipulation, trajectory reading/writing, etc...

.. toctree::
   :maxdepth: 2

   installation
   examples

Modules
-------

.. toctree::
   :maxdepth: 2

   topology
   forcefield
   simsys
   trajectory
   ommhelper
   chem
   scheduler
   analyzer
   wrapper

License
-------

mstk is licensed under LGPL v2.1